PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS785284.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 518aa    MW: 57065.7 Da    PI: 6.7476
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS785284.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.62.2e-21162215155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kp+++Wt+ L +rF++a++ + G e+A+P++il++m+v+g+t+++v+SHLQkYRl
  EcS785284.10 162 KPKVVWTTALQNRFLRAISII-GFENAVPRRILDVMNVPGITRANVASHLQKYRL 215
                   79*******************.9*******************************7 PP
2Response_reg54.66e-1938429109
                   ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++++ +al +l++++  +Dl+++D  mp+m+Glel ++i+ee  klp+i++++++ e  +l+ l++Ga  ++sKp+ pe+l +
  EcS785284.10   3 VKHPIDALSTLRQRQasFDLVVTDYHMPDMNGLELQEQIQEEF-KLPVIMMSGEERECIMLKSLERGAAFYISKPVRPEHLKN 84 
                   56667899999888888************************99.***********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011029.928190IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.7E-22292IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-24297No hitNo description
PfamPF000721.7E-15784IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-16889No hitNo description
Gene3DG3DSA:3.40.50.23003.7E-24146150No hitNo description
PROSITE profilePS512949.322159218IPR017930Myb domain
SuperFamilySSF466891.72E-16160219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-22160219IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-21162216IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
VTVKHPIDAL STLRQRQASF DLVVTDYHMP DMNGLELQEQ IQEEFKLPVI MMSGEERECI  60
MLKSLERGAA FYISKPVRPE HLKNIWQYAV AARKGKSVVI EEETNWEPDS QICSRPEDIM  120
PHVNSNSSSS VNKTKDVDSN NDEDSDTESQ EKNEDNNQKP RKPKVVWTTA LQNRFLRAIS  180
IIGFENAVPR RILDVMNVPG ITRANVASHL QKYRLFLRKV ADKGHKFNSE RALRSSFASA  240
FLASSTGREY RHNLLARNPW TPTFQSGLLG GSSTNMNYRS YGIVPFTSEG AAGSNSLSTL  300
GINKLPSLTD RASSSNYPIL GNSYPLSLLN SSALWANQLN SIGTSSLRPS DAIDGTYGFS  360
KQMTQQDQTI PEQFHHGIQK YTTLENGAKM ANNAYIGGSG YTMNSFPNVN SYKTGGYVGL  420
QTASGSELIQ VDDAAKSNKL NSAFSSEGLS FMPAFLSGPQ KENLLLSDGL SKENESHYVC  480
DVMKNISAPF SNSSGQLVGE GTLTDALSGH INNQAPYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18161221464ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010025123.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-44response regulator 2