PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS785264.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29502.3 Da PI: 6.8964 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.9e-19 | 153 | 247 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv +++++ +++ + +p +fa++h +++ ++++tl+ s rsW+vkl+ + ++++++GW F+++ +L++g ++vF+l++r++ ++v++ EcS785264.10 153 FFKVVIRPSYIEHHVVHVPSQFARQHiQEN-KKERTLR---YSDRSWSVKLSRYTREIQVFFSAGWPAFARETHLCVGNVCVFELIDRDDVVFKVSI 245 99************************6333.3434555...577*******55555555***************************99999899999 PP E- CS B3 97 fr 98 f+ EcS785264.10 246 FS 247 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.377 | 1 | 50 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-11 | 7 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-12 | 7 | 61 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 146 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-19 | 147 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-16 | 153 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-11 | 153 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.74E-15 | 153 | 247 | No hit | No description |
PROSITE profile | PS50863 | 13.042 | 153 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGVEKLNNST VWLWKGWQEF MRHYSIGHGH LVVFKYKGNS TFRVMIFDKS ASEIDYSLSS 60 ISNLGSGFIL PKREDVIEVE DSEDFAPCQK KRVDPHSPCS QPSPSCSSPD LEEGIGQSRC 120 RASHPEPNFG GPMSSWPLRS FELACEFDSE YPFFKVVIRP SYIEHHVVHV PSQFARQHIQ 180 ENKKERTLRY SDRSWSVKLS RYTREIQVFF SAGWPAFARE THLCVGNVCV FELIDRDDVV 240 FKVSIFSSGG KDQIHID |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065661.1 | 1e-136 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_010065663.1 | 1e-137 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4 | ||||
TrEMBL | A0A059BB47 | 1e-137 | A0A059BB47_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065661.1 | 1e-136 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-14 | B3 family protein |