PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS780960.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25117.9 Da PI: 7.7537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 94 | 137 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L EcS780960.10 94 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILCDTIDYMKEL 137 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-15 | 86 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.281 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 94 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.14E-4 | 95 | 141 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 95 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
PQITSSSYSP CDDAPLFPVQ ERTLPLSVMT EEGEATFLHA DGFKQTIGMQ GDCKPESMES 60 PNNQVPVFSA AGPSVGAKNN RARKKSGGQP SKNLMAERRR RKRLNDRLSM LRSIVPKISK 120 MDRTSILCDT IDYMKELLQK INHLQHDSQF GPYHLNIMDI IEDMKPNEML VRNTPKFNVE 180 RRDVETRIEI CCATKPGLLL SMVSKLDALG LDMQECVISC FND |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 102 | RKKSGGQPSKNLMAERRRRKR |
2 | 96 | 103 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060134.1 | 1e-162 | PREDICTED: transcription factor bHLH61 isoform X2 | ||||
Swissprot | Q9LSL1 | 7e-55 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A059BKD7 | 1e-161 | A0A059BKD7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060133.1 | 1e-162 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-57 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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