PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS778332.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 119aa MW: 13467.5 Da PI: 10.7033 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.5 | 3.1e-08 | 52 | 118 | 294 | 360 |
GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 i n +c+g+er++r +t++ r r +aGF+ ++l++++++ ak l+ ++ + +++eee ++l++ EcS778332.10 52 IGNGASCKGSERIKRAKTYKMSRVRNLRAGFRRLSLNKDTVSLAKGGLKSYYHKDFEIEEEGQWLLQ 118 677789**********************************************888*******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.1E-5 | 52 | 118 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
FQNILNETVD SPRDAMLNLI RKMNPNVFIQ GVKNGGHVSP FLPLDPRRCS SIGNGASCKG 60 SERIKRAKTY KMSRVRNLRA GFRRLSLNKD TVSLAKGGLK SYYHKDFEIE EEGQWLLQG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032389.1 | 6e-40 | PREDICTED: scarecrow-like protein 9 | ||||
TrEMBL | A0A059ADH9 | 1e-38 | A0A059ADH9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032389.1 | 2e-39 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 2e-26 | SCARECROW-like 14 |