PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS775174.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WOX | ||||||||
Protein Properties | Length: 189aa MW: 21342.3 Da PI: 10.0265 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 8e-21 | 30 | 91 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ EcS775174.10 30 KCGRWNPTTEQVKVLTDLFRSgLRTPSTDQIQKISTQLsfygKIESKNVFYWFQNHKARERQ 91 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.7 | 4.5e-37 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ EcS775174.10 30 KCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 93 678***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.916 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-4 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.0E-18 | 31 | 91 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-12 | 32 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.54E-4 | 33 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-8 | 33 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEEGMSGFYV KAAGVRGGHG GGNGGSGGTK CGRWNPTTEQ VKVLTDLFRS GLRTPSTDQI 60 QKISTQLSFY GKIESKNVFY WFQNHKARER QKRRKVSVDD QTKEALRSEE KISSAKRTHF 120 YPPSKPYPIS RASSTSCVSI QHHISDINIS YLTDKVTHRE NTTYRSVFII IIIPIIISSH 180 CCCYYIIIT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067503.1 | 1e-66 | PREDICTED: WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A059BHR3 | 3e-65 | A0A059BHR3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067503.1 | 5e-66 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4014 | 28 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 1e-41 | WUSCHEL related homeobox 5 |