PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS772733.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 79aa MW: 9236.38 Da PI: 9.1387 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.8 | 6.1e-06 | 38 | 56 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+ r G+C +G+ C++ H EcS772733.10 38 CSFYIR-GECTRGAECPYRH 56 9*9999.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16131 | 2.6E-8 | 21 | 69 | IPR032297 | Torus domain |
PROSITE profile | PS50103 | 13.939 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-6 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
TRAGLDYESS YGKVRANDTI LKLQRTTPYY KRNRAHVCSF YIRGECTRGA ECPYRHEMPV 60 TGELSQQNIK DRYYGYVSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_P | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
5xjc_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
5yzg_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
5z56_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
5z57_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
6ff4_P | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
6ff7_P | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
6icz_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
6id0_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
6id1_O | 9e-24 | 17 | 75 | 144 | 204 | Pre-mRNA-splicing factor RBM22 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041142.1 | 4e-52 | PREDICTED: zinc finger CCCH domain-containing protein 4 | ||||
Swissprot | Q9LNV5 | 9e-45 | C3H4_ARATH; Zinc finger CCCH domain-containing protein 4 | ||||
TrEMBL | A0A059AFG1 | 1e-47 | A0A059AFG1_EUCGR; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2I0IQ75 | 4e-48 | A0A2I0IQ75_PUNGR; Uncharacterized protein | ||||
STRING | XP_010041142.1 | 2e-51 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3479 | 3 | 3 |