PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS771289.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 101aa    MW: 10996.3 Da    PI: 10.5203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS771289.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.81.4e-1081101222
                   --SS-EEEEEEE--TT-SS-E CS
          WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                   +D ++WrKYGqK++kgs++pr
  EcS771289.10  81 SDSWAWRKYGQKPIKGSPYPR 101
                   69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-977101IPR003657WRKY domain
SuperFamilySSF1182907.06E-878101IPR003657WRKY domain
PROSITE profilePS5081112.95581101IPR003657WRKY domain
PfamPF031063.7E-682101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MHGSFQSGSF MTEHDDNGSS PENSVGESPP PPSRYGDTMK TGPTAPSPKR SRRGMQKRVV  60
SIPIKDVEGS RLKGEGAPPP SDSWAWRKYG QKPIKGSPYP R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728483.12e-66PREDICTED: probable WRKY transcription factor 65 isoform X2
SwissprotQ9LP566e-23WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A059C7108e-62A0A059C710_EUCGR; Uncharacterized protein
STRINGXP_010057124.12e-63(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.13e-26WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]