PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS764989.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25151.1 Da PI: 4.6982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69.5 | 5.8e-22 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r +r++lg+f+taeeAa+a+++a+ +++g EcS764989.10 99 RYRGVRQRP-WGKWAAEIRDPR----RgARVWLGTFDTAEEAARAYDNAAIEFRG 148 7********.**********83....46************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-16 | 99 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-34 | 99 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-41 | 99 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.87 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-24 | 99 | 157 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.74E-33 | 99 | 158 | No hit | No description |
PRINTS | PR00367 | 1.4E-12 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-12 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
VATLAEVISG TPSARSGSGE DPAGPASGSG GLVTCRECGI EGCLGCSYFP PTLERGGASS 60 SQAEASSMHG QSASNAAGGS GHAPGAADAS QEYGARKNRY RGVRQRPWGK WAAEIRDPRR 120 GARVWLGTFD TAEEAARAYD NAAIEFRGPR AKLNFPVVDH SLWESSAPSL LERREITPNE 180 SEQYPETERA PAEAEQGNAR GSELWEVFGD DEMQQWMTTI GFGSDHSSDS SNGNGHSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 95 | 157 | 1 | 64 | ATERF1 |
3gcc_A | 1e-23 | 95 | 157 | 1 | 64 | ATERF1 |
5wx9_A | 2e-23 | 94 | 156 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068468.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_010068468.1 | 1e-168 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 9e-26 | redox responsive transcription factor 1 |