PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS756446.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 125aa MW: 14306.1 Da PI: 9.7449 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.5 | 6.6e-13 | 42 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k ++ A I++ + k+++lg++ t+ +Aa+a+++ +++++g EcS756446.10 42 HYRGVRPRK-PRKFGAVIQV------NgKQVWLGTYKTKIDAARAYDQKALEFRG 89 7****9777.9*********......44************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 3.2E-15 | 2 | 124 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Gene3D | G3DSA:3.30.730.10 | 1.2E-20 | 41 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.766 | 42 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-17 | 42 | 98 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.07E-17 | 42 | 99 | No hit | No description |
SMART | SM00380 | 7.4E-22 | 42 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-7 | 42 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 79 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MASKTLQSPK VAVLRKVVLP QSAESNQTVQ KGSNQSRDEW RHYRGVRPRK PRKFGAVIQV 60 NGKQVWLGTY KTKIDAARAY DQKALEFRGS KAILNFPPDD KKEEVEGDNE VIVKEEEVEG 120 DWHEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 41 | 97 | 4 | 63 | ATERF1 |
3gcc_A | 8e-15 | 41 | 97 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | PRKPRKF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041307.1 | 3e-67 | PREDICTED: ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | Q8VY90 | 2e-16 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A059C150 | 3e-28 | A0A059C150_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041307.1 | 1e-66 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-18 | ERF family protein |
Publications ? help Back to Top | |||
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