PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS756445.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 121aa MW: 13188.8 Da PI: 10.8645 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.2 | 5.5e-15 | 5 | 54 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GV ++++ r+ AeIrdp++ng k+++lg+fgt +Aa+a+++ +++++g EcS756445.10 5 HYIGV--RPRSRRFGAEIRDPNQNG--KKVWLGTFGTDIDAAEAYDRKALEFRG 54 68999..58899*********8887..************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-22 | 4 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.029 | 5 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-17 | 5 | 62 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-16 | 5 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.3E-8 | 5 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-22 | 5 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 121 aa Download sequence Send to blast |
DEQRHYIGVR PRSRRFGAEI RDPNQNGKKV WLGTFGTDID AAEAYDRKAL EFRGSKAILN 60 FPLEAGKRAD GKKRPQETTA ARADGKKRRQ ETTPRGGGGG GGGGDNKVIV NKEKVKGDLA 120 P |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 4 | 63 | 4 | 64 | ATERF1 |
3gcc_A | 2e-19 | 4 | 63 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 71 | 88 | KKRPQETTAARADGKKRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041307.1 | 1e-38 | PREDICTED: ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | A0A218XP06 | 8e-25 | A0A218XP06_PUNGR; Uncharacterized protein | ||||
STRING | XP_010041307.1 | 5e-38 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-25 | ERF family protein |