PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS756411.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23256.7 Da PI: 4.0196 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 20 | 62 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT +E +ll++a +++ + W+ Ia+++ ++t qc++++++ EcS756411.10 20 GNWTDQETLLLLEALELYKEN-WSEIAEHVA-TKTKAQCILHFLQ 62 89*****************88.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 21.701 | 17 | 68 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 17 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.99E-13 | 17 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 18 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 20 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-4 | 38 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSSSDFILME PAELHGVTGG NWTDQETLLL LEALELYKEN WSEIAEHVAT KTKAQCILHF 60 LQMPIQDAFL DCDDDVDATS KENTDLTTTN DDAPISRDTP ERTEGKTDPV EDQPQTSPMD 120 ISKAEDTHEG KVDEKTSSQE EANKSKVAQD NPKLEDAEVK VKDIKENLAL KALREAFEAL 180 GYFSTPESSV SFGEVGNPVM ALVWWTLCF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028579.1 | 1e-137 | PREDICTED: SWI/SNF complex subunit SWI3D | ||||
Swissprot | Q8VY05 | 8e-52 | SWI3D_ARATH; SWI/SNF complex subunit SWI3D | ||||
TrEMBL | A0A059ANS0 | 1e-136 | A0A059ANS0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010028579.1 | 1e-137 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35282 | 2 | 2 |