PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS754042.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 334aa    MW: 37471.3 Da    PI: 9.7
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS754042.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-1359107155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+ykGV   + +grW A+I+d      r+r+++g+f  ++eAa a++ a+k+++g
  EcS754042.10  59 SKYKGVVPQP-NGRWGAQIYDN-----RQRVWIGTFSKEDEAALAYDIAAKRFRG 107
                   89****9888.8*********4.....6**********99*************98 PP
2B396.22.2e-30192297199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+ t+sdv+k++r+v+pk++ae+h       +  + +++ l + d+ g++W+++++y+++s++yvlt+GW +Fvk++ L++gD+v F+++   e+
  EcS754042.10 192 FQKEVTRSDVGKLNRFVIPKQHAEKHfplrnrtSPTTSKGVLLNFIDSGGKVWRFRYSYWNSSRSYVLTRGWTRFVKEKSLRTGDIVSFHRSAGPEK 288
                   99**************************99987555568999************************************************9988889 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l++k  r+
  EcS754042.10 289 QLHIKCMRR 297
                   899999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1659116IPR016177DNA-binding domain
PfamPF008479.2E-959107IPR001471AP2/ERF domain
CDDcd000183.69E-2459114No hitNo description
Gene3DG3DSA:3.30.730.103.0E-1960116IPR001471AP2/ERF domain
SMARTSM003802.3E-2760121IPR001471AP2/ERF domain
PROSITE profilePS5103219.42760115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.4E-37183298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29190298IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-26191283No hitNo description
PROSITE profilePS5086313.987192298IPR003340B3 DNA binding domain
PfamPF023622.7E-26192297IPR003340B3 DNA binding domain
SMARTSM010193.4E-23192298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDGNSICIDN LSSTSDSNFI PLPSKSLQPQ SLCHLGSGTG VILDCEGAIE AESRKQPSSK  60
YKGVVPQPNG RWGAQIYDNR QRVWIGTFSK EDEAALAYDI AAKRFRGRDA ITNFKQRSDT  120
EDCDLEAAFL NSHSKEEIVD MLRKHAYYNE LEQSKRKYFN ANGSGNRVSM MMEAIRDPSG  180
PDRAAMACHL LFQKEVTRSD VGKLNRFVIP KQHAEKHFPL RNRTSPTTSK GVLLNFIDSG  240
GKVWRFRYSY WNSSRSYVLT RGWTRFVKEK SLRTGDIVSF HRSAGPEKQL HIKCMRRSGL  300
SQAGPIHSVQ MVRLFGVDIF EVSVEDGGGY GGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4719130513127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046597.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M51e-121RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A058ZSG90.0A0A058ZSG9_EUCGR; Uncharacterized protein
STRINGXP_010046597.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-123RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]