PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS752808.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HSF

Protein Properties

Length: 171aa MW: 20215.1 Da PI: 8.705

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS752808.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	94.5	1.1e-29	1	77	17	102
TTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 17 eliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ ++ weF++++F+kg k+ll++i+r+k+ EcS752808.10 1 HIVSWGEEEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLCEIHRRKT 77 69**********************************************999.........********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-29	1	75	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.8E-26	1	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.12E-25	1	75	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.7E-35	1	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-10	24	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	25	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-10	37	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
HIVSWGEEEA TFVVWRPPEF ARDLLPNYFK HNNFSSFVRQ LNTYGFKKIV ADRWEFANEY 60 FRKGAKHLLC EIHRRKTPQH QSHDHTPPPP LPHFFQPVDE NLCWPSADPP FPPQPKPLPH 120 GDVLAVLTED NQRLRRKNLM LLSELTHMKS LYNDIIYFIK NHVKPLPHDP A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	1e-14	3	75	22	105	Heat shock factor protein 2
5d8l_B	1e-14	3	75	22	105	Heat shock factor protein 2
5d8l_D	1e-14	3	75	22	105	Heat shock factor protein 2
5d8l_F	1e-14	3	75	22	105	Heat shock factor protein 2
5d8l_H	1e-14	3	75	22	105	Heat shock factor protein 2
5hdk_A	1e-14	3	75	27	110	Heat shock factor protein 2
5hdk_B	1e-14	3	75	27	110	Heat shock factor protein 2
5hdk_C	1e-14	3	75	27	110	Heat shock factor protein 2
5hdk_D	1e-14	3	75	27	110	Heat shock factor protein 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031706.1	1e-125	PREDICTED: heat stress transcription factor B-4b
Swissprot	Q9C635	1e-69	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A059AAG2	1e-123	A0A059AAG2_EUCGR; Uncharacterized protein
STRING	XP_010031706.1	1e-124	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2900	28	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	2e-66	heat shock transcription factor B4