PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS751656.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 122aa    MW: 14251.2 Da    PI: 6.2602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS751656.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS107.61.7e-331119256374
          GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                   rf eal ++sa+fd l+a++pr++ er  +E+e+lg++++nv+aceg++r+er et+++ + r  +aGF+++pl++++++ ak  l+ ++ + +++e
  EcS751656.10   1 RFREALFHFSAVFDILDATVPRDDPERLLLEQEILGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDVVSLAKDKLKSCYHKDFEIE 97 
                   8*****************************************************************************************889**** PP

          GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                   e+ ++l++gWk+r ++++S Wr
  EcS751656.10  98 EDGQWLLQGWKGRIIYALSTWR 119
                   *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.022199IPR005202Transcription factor GRAS
PfamPF035145.7E-311119IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
RFREALFHFS AVFDILDATV PRDDPERLLL EQEILGKQAM NVIACEGSDR IERPETYKSS  60
HVRNLRAGFR QLPLDKDVVS LAKDKLKSCY HKDFEIEEDG QWLLQGWKGR IIYALSTWRP  120
DC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032388.14e-81PREDICTED: scarecrow-like protein 9 isoform X1
RefseqXP_018720025.12e-81PREDICTED: scarecrow-like protein 9 isoform X2
SwissprotO809334e-47SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059ACH28e-80A0A059ACH2_EUCGR; Uncharacterized protein
STRINGXP_010032388.11e-80(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-49GRAS family protein