PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS751186.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 677aa    MW: 75331.2 Da    PI: 6.8213
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS751186.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-21105160156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  EcS751186.10 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQLK 160
                   7999************************************************9877 PP
2START223.85.1e-702744972206
                   HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                   l ++a++el k+a+a+ep+W +s+    e++n+de++++f+ +        +s+ea+r++gvv+ +l++lv++++d++ qW+e+++    ka+t++v
  EcS751186.10 274 LVNQAMEELKKMATAGEPLWIRSVetgrEILNYDEYVKEFKVEAPsegrpkRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPcmisKAATVDV 369
                   56789***********************************55544999******************************.****************** PP

                   ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
         START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   ++sg      ga+qlm+aelq+l+p+vp R+++f+Ry++ql+a++w++vdvS++  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++
  EcS751186.10 370 VCSGegpnrnGAVQLMFAELQMLTPMVPtREVYFIRYCKQLSAEQWALVDVSIEKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQK 465
                   **********************************************************98.9*********************************** PP

                   SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                    ++h ++r +v+sgla+ga++w+ tlq qce+
  EcS751186.10 466 TTVHPMYRTIVNSGLAFGARHWMTTLQLQCER 497
                   ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2190163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-2491156IPR009057Homeodomain-like
PROSITE profilePS5007118.285102162IPR001356Homeobox domain
SMARTSM003895.4E-19104166IPR001356Homeobox domain
PfamPF000469.4E-19105160IPR001356Homeobox domain
CDDcd000866.77E-17109160No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084840.923264500IPR002913START domain
SuperFamilySSF559612.47E-33266497No hitNo description
CDDcd088751.98E-111268496No hitNo description
SMARTSM002342.0E-71273497IPR002913START domain
Gene3DG3DSA:3.30.530.209.2E-5274492IPR023393START-like domain
PfamPF018521.0E-55274497IPR002913START domain
SuperFamilySSF559612.75E-11519665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MGVVDMSNNN PPTSRTKDFF ASPALSLSLA GIFRDAGAAA AASASMDVEE GDEGSGGGGG  60
RREDTVEISS ENSGPARSRS DDEFDPDGDN DEDGGDGDKS KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQLK AIQERHENSL LKTEMEKLRD  180
ENKAMRDTIQ KSCCPNCGSA TTSRDTALTT QDQQLRIENA RLKAEVEKLR TALGKYTPGT  240
ASPSCSAGND QENRSSLDFY TGIFGLDKSK IMELVNQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYV KEFKVEAPSE GRPKRSIEAS RETGVVFVDL PRLVQSFMDV NQWKEMFPCM  360
ISKAATVDVV CSGEGPNRNG AVQLMFAELQ MLTPMVPTRE VYFIRYCKQL SAEQWALVDV  420
SIEKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVIWVEH LECQKTTVHP MYRTIVNSGL  480
AFGARHWMTT LQLQCERLVF FMATNVPTKD SNGVATLAGR KSILRLAQRM TQSFCQAIGA  540
SSYHSWTKVP TKTGEDIRVA SRKNLNDPGE PLGVILCAVS SVLLPVSPHV LFDFLRDESR  600
RSEWDIMASG SPVQSIANLA KGQDRGNAVN IQTMKNKDNS MWVLQDCCTN AYESMVVYAR  660
VDITGMQAVM TGCDSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105KKKKRK
2100106KKKKRKK
3102106KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062490.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A059BUK70.0A0A059BUK7_EUCGR; Uncharacterized protein
STRINGXP_010062490.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]