PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS748440.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14328.8 Da PI: 10.6515 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6e-12 | 36 | 123 | 1 | 90 |
EEEE-..-HHHHT..T-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlks..grl.vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++v ps+v +s +r+ ++p kf+++h k +s++++ ++++sW kli + +++ l +GW F++a L+egD+ vF+l++rs + EcS748440.10 36 FISVAYPSYVKNStaARFsSVPVKFMRTHI-K--RSMQVMTIKPKNESWPAKLIKfpWDHGK---L-SGWFPFARATSLCEGDVYVFELTKRSPT 123 66677788888886644459*******994.3..6789999************665655542...4.6********************9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-13 | 28 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-11 | 30 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-8 | 37 | 123 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.854 | 39 | 127 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.89E-7 | 55 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
SASRACPAML VARRCNVPCS AALEMARDFK SKHPTFISVA YPSYVKNSTA ARFSSVPVKF 60 MRTHIKRSMQ VMTIKPKNES WPAKLIKFPW DHGKLSGWFP FARATSLCEG DVYVFELTKR 120 SPTVLEV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718135.1 | 9e-56 | PREDICTED: B3 domain-containing protein REM19-like | ||||
TrEMBL | A0A059ALH8 | 1e-73 | A0A059ALH8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027828.1 | 2e-50 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35253 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-08 | B3 family protein |