PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS744813.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 385aa    MW: 43740.2 Da    PI: 9.9567
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS744813.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.28.1e-441142742135
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eaesssssa 82 
                   + kkdrh ki+T++g+RdRRvRls+e+ +rfFdLqd+LGfdk+skt+eWLl+++ +aik+l++                 s s+sec +a+s  +  
  EcS744813.10 114 PMKKDRHRKICTAQGLRDRRVRLSIEISRRFFDLQDMLGFDKASKTLEWLLTKSRKAIKDLAKGkrkdlvlrpvedekgWSCSSSECdQAVSAGVVI 210
                   679*************************************************************899999998877776444445663333332222 PP

           TCP  83 snsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                   +    g               ++  + + +  s++++   + lakesrakararar rtr km+++n 
  EcS744813.10 211 A----GngivpvddnrsvpvgDNDYQGMFKMVSSNRDGGLHVLAKESRAKARARARARTRAKMSNDNP 274
                   2....033446666777889866666664555555555589***********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-37115271IPR005333Transcription factor, TCP
PROSITE profilePS5136934.852116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.102251268IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVLWSLCVQK VLQRPKNTDA RTHRHIMFPS MMTNNNSNPA HHLLSPSLPN TSSSPTNQEL  60
INQSILFHHQ MPFTDHHFFF PNNHIYPVIT EAPIDIRSPK NGAKVSSSNP ANKPMKKDRH  120
RKICTAQGLR DRRVRLSIEI SRRFFDLQDM LGFDKASKTL EWLLTKSRKA IKDLAKGKRK  180
DLVLRPVEDE KGWSCSSSEC DQAVSAGVVI AGNGIVPVDD NRSVPVGDND YQGMFKMVSS  240
NRDGGLHVLA KESRAKARAR ARARTRAKMS NDNPKLDHHD QFKKLCPDSQ ASSEEKKSNH  300
YVQAQADHQA FSEHQEEVDI EQSVLINRKL KQSSVIINNY QKNLDNDNNS QFYYHDVAHQ  360
NWDINPVIGQ STFSSFTNMN FSSGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253262RAKARARARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719266.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A059ADX70.0A0A059ADX7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034424.11e-176(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-28TCP family protein