PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS739121.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 485aa    MW: 54001.1 Da    PI: 6.9518
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS739121.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.31.3e-120824852374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaal.............. 81 
                   ++lL++cAe +s ++++ a++l++ ls ++sp+gd+++Rl++ f +AL+ rl+r  s +++a pp+++s       s++                  
  EcS739121.10  82 RQLLVTCAELLSLSNFAPAHRLISILSANSSPYGDSTERLVHQFSRALSIRLHR--SAVAAAAPPNRSSL-LfphRSNS---Stvfgfgvdsavrpg 172
                   799***************************************************..55665555555542.22322222...134578899999*** PP

          GRAS  82 ............klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg........ppslRiTgvgspesgskeel 158
                                ++++v+P+++fshltaNqaIlea++g+++vHi+D+di++G+QWp+L+qa+ +R++         pp+lRiTg g+    + e+l
  EcS739121.10 173 qgsdpsalqscyLTLNQVTPFIRFSHLTANQAILEAIDGQRAVHIVDLDIMHGVQWPPLMQAIVERSSTndknalllPPTLRITGAGH----DLEAL 265
                   *****999887556*****************************************************5556789999***********....***** PP

          GRAS 159 eetgerLakfAeelgvpfefnvl......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                   ++tg+rL  fA++lg++f+f +l      ++ +l++  ++e+++ p+EalaVn+vl lhrll++++   s    +L+ +k l+P+vv+v+e+ea+hn
  EcS739121.10 266 HRTGDRLCTFAQSLGLEFQFCPLllphdaLSVALHAAIPSEISTLPDEALAVNCVLCLHRLLKDDARELS---IFLRKIKALRPRVVTVAEREASHN 359
                   ***********************999886666899999************************88887777...9*********************** PP

          GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                   ++ Fl+rf+eal++y+a+fdslea+lp+ s+er  +E++++grei +++  eg+ r erhe++e+W+  l+++GF +vpls +a +qaklllr ++ 
  EcS739121.10 360 HPMFLQRFVEALDHYTAVFDSLEATLPPSSRERLALEQAWFGREIADIIGEEGEGRLERHERFESWEVLLRSSGFVNVPLSPFALSQAKLLLRLHYp 456
                   ************************************************************************************************* PP

          GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   s+gy+++ ++ s++lgW++r+L++vS+Wr
  EcS739121.10 457 SEGYQLQIKNSSAFLGWQSRALFTVSSWR 485
                   ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.88355464IPR005202Transcription factor GRAS
PfamPF035144.4E-11882485IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLGSFSSNNS HEEEEQDHHH HHHQHHHHSD SPSDLQHHQF HYHHLIPYHH APPALPSPPP  60
PPFPTPPSTL SSPASPSVIN TRQLLVTCAE LLSLSNFAPA HRLISILSAN SSPYGDSTER  120
LVHQFSRALS IRLHRSAVAA AAPPNRSSLL FPHRSNSSTV FGFGVDSAVR PGQGSDPSAL  180
QSCYLTLNQV TPFIRFSHLT ANQAILEAID GQRAVHIVDL DIMHGVQWPP LMQAIVERSS  240
TNDKNALLLP PTLRITGAGH DLEALHRTGD RLCTFAQSLG LEFQFCPLLL PHDALSVALH  300
AAIPSEISTL PDEALAVNCV LCLHRLLKDD ARELSIFLRK IKALRPRVVT VAEREASHNH  360
PMFLQRFVEA LDHYTAVFDS LEATLPPSSR ERLALEQAWF GREIADIIGE EGEGRLERHE  420
RFESWEVLLR SSGFVNVPLS PFALSQAKLL LRLHYPSEGY QLQIKNSSAF LGWQSRALFT  480
VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-678848425377Protein SCARECROW
5b3h_D3e-678848425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061376.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A059BRM70.0A0A059BRM7_EUCGR; Uncharacterized protein
STRINGXP_010061376.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-122GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]