PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS738371.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13684.7 Da PI: 10.018 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.5 | 9e-22 | 28 | 115 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kvlt sd++++g +++ k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +g ++vF EcS738371.20 28 FCKVLTASDTSTHGGFSVLMKHATEClppldMNQSTPTQELVARDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGNSFVFL 115 99****************************9445555669***********************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-33 | 16 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-34 | 20 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-16 | 26 | 114 | No hit | No description |
PROSITE profile | PS50863 | 11.039 | 28 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-10 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-20 | 28 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
FFFFLQQSEP MSPDPYLPEP PRPRVHSFCK VLTASDTSTH GGFSVLMKHA TECLPPLDMN 60 QSTPTQELVA RDLHGYEWKF KHIFRGQPRR HLLTTGWSTF VTSKRLVAGN SFVFLRYR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldw_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldw_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldx_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldx_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldy_A | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
4ldy_B | 3e-54 | 5 | 116 | 101 | 212 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053162.1 | 6e-71 | PREDICTED: auxin response factor 9 | ||||
Swissprot | Q9XED8 | 2e-61 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A059CGC6 | 1e-69 | A0A059CGC6_EUCGR; Auxin response factor | ||||
STRING | XP_010053162.1 | 2e-70 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27676 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 8e-58 | auxin response factor 9 |