PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS733297.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 120aa MW: 14088.2 Da PI: 6.5091 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 92.7 | 5.7e-29 | 1 | 115 | 259 | 373 |
GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 eal + sa++d l++++ +++ +r+++Er ++g+ei+n+vaceg er+e+ et+++ + rl+++GF+++pl+++ +k+ ++ l+ + + +++eee+ EcS733297.10 1 EALFHLSAIYDLLDTTVVHNNVQRSVLERDVFGQEIMNIVACEGLERVEKPETYKQRQLRLTRVGFQQLPLDQELMKKTRAKLSGNYRKDFELEEEN 97 799************************************************************************************888******* PP GRAS 356 gslvlgWkdrpLvsvSaW 373 ++++lgW++r + +++W EcS733297.10 98 NWMLLGWRGRIISCCTCW 115 ****************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.0E-26 | 1 | 115 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 16.564 | 1 | 96 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 120 aa Download sequence Send to blast |
EALFHLSAIY DLLDTTVVHN NVQRSVLERD VFGQEIMNIV ACEGLERVEK PETYKQRQLR 60 LTRVGFQQLP LDQELMKKTR AKLSGNYRKD FELEEENNWM LLGWRGRIIS CCTCWLSAIV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043520.1 | 3e-69 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724289.1 | 3e-69 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724290.1 | 3e-69 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724291.1 | 3e-69 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A059D471 | 1e-73 | A0A059D471_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043520.1 | 1e-68 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 4e-41 | SCARECROW-like 14 |