PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS728957.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 25243.8 Da PI: 4.7053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.8e-19 | 109 | 160 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp++ng +r +lg++ t+eeA a+++a+ +++g+ EcS728957.10 109 RYRGVRRRP-WGKYAAEIRDPKKNG--ARRWLGTYETPEEAGLAYDQAAFAMRGA 160 59*******.***********9998..*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-13 | 109 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 109 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 109 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-34 | 109 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-13 | 110 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.24E-24 | 117 | 169 | No hit | No description |
PRINTS | PR00367 | 4.6E-13 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSTASSTMSD SDAFLLECIR QHLLNDDDFE TLAKIAENAR FHSPDPSFDA SSSPETTMSF 60 EANDYDDVDI YLDAPKDAIG FELPSSSNEQ LAVDYRDVQV NEALPGGYRY RGVRRRPWGK 120 YAAEIRDPKK NGARRWLGTY ETPEEAGLAY DQAAFAMRGA KARLNFPHLI GCDGLAPVRV 180 TRKRHHSPEA ESTSLDPNWR QEDLTGLASG PDELNGHLLS FQQTRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 107 | 167 | 3 | 63 | ATERF1 |
3gcc_A | 2e-26 | 107 | 167 | 3 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058510.1 | 1e-160 | PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like | ||||
TrEMBL | A0A059C5A3 | 1e-101 | A0A059C5A3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058510.1 | 1e-159 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-33 | ethylene-responsive element binding factor 13 |