PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS727687.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 111aa MW: 13167.2 Da PI: 9.6304 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 95.2 | 1e-29 | 1 | 109 | 266 | 374 |
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq.aklllrkvksdgyrveeesgslvlg 361 +lfd+l++ +pre++er+ +E+ +lgre+ n +aceg er+er e++++W+ r ++aGF +vpls ++a ++ + ++++ + + v+e ++l++g EcS727687.10 1 SLFDMLDTIVPRENQERMLIEKDMLGREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRSVARFvINNIASRYH-KDFVVDEVGKWLLIG 96 59***************************************************************9987661566666666.55************* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+r L+++S W+ EcS727687.10 97 WKGRFLYAFSTWK 109 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.5E-27 | 1 | 109 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 16.453 | 1 | 89 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
SLFDMLDTIV PRENQERMLI EKDMLGREAL NTIACEGWER VERPESYKQW QLRNMRAGFV 60 QVPLSRSVAR FVINNIASRY HKDFVVDEVG KWLLIGWKGR FLYAFSTWKL A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018721242.1 | 2e-71 | PREDICTED: scarecrow-like protein 9 | ||||
Refseq | XP_018721244.1 | 2e-71 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-43 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059A8A9 | 2e-70 | A0A059A8A9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037825.1 | 3e-71 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 4e-46 | GRAS family protein |