PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS723925.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 140aa MW: 14679.6 Da PI: 9.0482 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.4 | 2.1e-12 | 107 | 131 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C++G+rC+FaHg EcS723925.10 107 FKTKLCENFAK-GSCNFGERCHFAHG 131 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 1.61E-15 | 9 | 87 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 14 | 84 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.837 | 15 | 79 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.6E-16 | 15 | 86 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.4E-10 | 17 | 81 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.19E-12 | 19 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-16 | 104 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.61E-9 | 105 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.981 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
PPPPGLAAAA SFGASATAKI SIDASLAGPI IGRNGVNSKQ ICRVTGAKLS IREHDSDPNL 60 RNIELEGTFD QIKQASAMVH ELIANVASAS RPAMKNSAAH SAPRSNFKTK LCENFAKGSC 120 NFGERCHFAH GTEELNKPGL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043856.1 | 1e-95 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 5e-56 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A059D5U6 | 3e-94 | A0A059D5U6_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059D6M4 | 1e-94 | A0A059D6M4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043856.1 | 5e-95 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-48 | C3H family protein |