PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS722837.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 304aa    MW: 33519.6 Da    PI: 4.5101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS722837.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-193382255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  EcS722837.10 33 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 82
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-383396IPR001471AP2/ERF domain
PROSITE profilePS5103224.0923390IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-223391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-323391IPR001471AP2/ERF domain
CDDcd000184.73E-333392No hitNo description
PfamPF008476.1E-123482IPR001471AP2/ERF domain
PRINTSPR003677.8E-123445IPR001471AP2/ERF domain
PRINTSPR003677.8E-125672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MFISSDSEGS STTKSVEYNG QAEKSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL  60
GTFNTAEEAA RAYDAEARRI RGKKAKVNFP DDSSSASSKR SVKSNVQKLP KTTTNNVQPN  120
LNQNFNYANS SDDDIYSSMG FVEEKPPTNQ FYMDALNAQG VSGMNSLSPA DNAPLYFNSD  180
QGSNSFECSD FGWGENGPRT PDVSSVLSAT LEVDESQFED ANPRKKIRSA SDDVSEEENT  240
AAKTFSEELS AFESDMKFFQ MPFVDGGWDP SVEALLGGEA TQDGGNAVDL WSFDDLAPMM  300
GGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-213390260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-2132981380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029503.20.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A059AR730.0A0A059AR73_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010029503.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-56related to AP2 2