PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS720831.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 104aa    MW: 11832 Da    PI: 5.6262
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS720831.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof86.42.7e-2763104243
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkG 43 
                   ++k+++cprC+s++tkfCyynny+++qPr+fC+aC+ryWt+G
  EcS720831.10  63 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCRACQRYWTAG 104
                   7899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2251104IPR003851Zinc finger, Dof-type
PfamPF027011.2E-2265104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.12367104IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MQEEDEPPPN SQELDPSRTS PDAVNPMTPS IQEESTTSHI TETGAQEEHG TPKNSQGKTL  60
KKPDKIIPCP RCNSMDTKFC YYNNYNVNQP RHFCRACQRY WTAG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037174.16e-67PREDICTED: cyclic dof factor 3 isoform X2
SwissprotQ93ZL54e-29CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A059A6742e-65A0A059A674_EUCGR; Uncharacterized protein
STRINGXP_010037173.13e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-31cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]