PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS717727.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11289.1 Da PI: 11.6344 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 14 | 55 | 1 | 42 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 +g+WT+eEd++l+d+++++G g+W++ ++ g+ R++k+c++ EcS717727.10 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRL 55 79******************************99******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 5 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-10 | 9 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.228 | 9 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-13 | 14 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-8 | 16 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLQVDKL 60 PPPRPQARQL HRGRRRAHHQ APQLARQQVR LPFHRLQ |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021748489.1 | 2e-34 | transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 4e-33 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2P9JZB8 | 1e-33 | A0A2P9JZB8_AMATR; Transcription factor MYB3 | ||||
STRING | Gorai.009G288900.1 | 3e-33 | (Gossypium raimondii) | ||||
STRING | XP_002534486.1 | 3e-33 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-35 | myb domain protein 6 |