PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS708835.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 116aa MW: 12280.8 Da PI: 8.2231 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.5e-10 | 56 | 81 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ EcS708835.10 56 KTRLCNKFNTAEGCKFGDKCHFAHGE 81 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.427 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-15 | 51 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 52 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.2E-4 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
TSGCPFGEGC HFLHYVPGGF KAVSQMLNLG GNPTLPHASR NAAPSYPEAP SPTAVKTRLC 60 NKFNTAEGCK FGDKCHFAHG EWELGKPTGP SYDDPRGMVP PSGRYGGRNE PPPPGL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043856.1 | 2e-81 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 4e-33 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A059D5U6 | 5e-80 | A0A059D5U6_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059D6M4 | 2e-80 | A0A059D6M4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043856.1 | 8e-81 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-15 | C3H family protein |