PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS661916.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 45aa MW: 5051.72 Da PI: 9.4131 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 57.4 | 3.8e-18 | 6 | 45 | 2 | 41 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqr 41 Cq+e+C+adl+ea++yhrrhkvCe+h+kap+v+v gl qr EcS661916.10 6 CQAEKCTADLTEARQYHRRHKVCEQHAKAPAVVVGGLYQR 45 ************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 15.605 | 3 | 45 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-17 | 3 | 45 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-17 | 5 | 45 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.0E-13 | 6 | 45 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 45 aa Download sequence Send to blast |
AASRNCQAEK CTADLTEARQ YHRRHKVCEQ HAKAPAVVVG GLYQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape. {ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:16914499, ECO:0000269|PubMed:9301089}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:16914499}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035775.1 | 1e-24 | PREDICTED: squamosa promoter-binding protein 1 | ||||
Swissprot | P93015 | 1e-13 | SPL3_ARATH; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A059A0I2 | 3e-23 | A0A059A0I2_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059A1M4 | 7e-24 | A0A059A1M4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035775.1 | 4e-24 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 4e-16 | squamosa promoter binding protein-like 3 |