PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS647077.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10511.3 Da PI: 9.6171 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.8e-32 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyey++ EcS647077.10 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYAN 75 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-42 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.81E-40 | 18 | 79 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-30 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MVFPTQATPE ESPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCEAEVA 60 LIVFSSRGRL YEYANDRYLC SLLFGLFCLI S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-21 | 17 | 79 | 1 | 66 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001289652.1 | 1e-49 | glycogen debranching enzyme | ||||
Refseq | XP_010057184.1 | 1e-49 | PREDICTED: glycogen debranching enzyme isoform X1 | ||||
Refseq | XP_010057185.1 | 1e-49 | PREDICTED: glycogen debranching enzyme isoform X2 | ||||
Refseq | XP_010057186.1 | 1e-49 | PREDICTED: glycogen debranching enzyme isoform X2 | ||||
Refseq | XP_018728407.1 | 1e-49 | PREDICTED: glycogen debranching enzyme isoform X1 | ||||
Swissprot | Q43585 | 1e-40 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A059C6W4 | 3e-48 | A0A059C6W4_EUCGR; Uncharacterized protein | ||||
TrEMBL | C0STT0 | 3e-48 | C0STT0_EUCGR; Agamous-like protein | ||||
STRING | XP_010057183.1 | 5e-49 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-39 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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