PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS628566.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22311.3 Da PI: 8.8089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.3 | 8.8e-25 | 18 | 96 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++++++fF++ ++++a+g r++r+t+ gyWkatg+ +v+s++++++g+kk++vfy g+ap+g+kt+W ++eyr+ EcS628566.10 18 MCREDKEQCFFFAPMQERQARGGRPSRSTAVGYWKATGSPCQVYSSENKVIGMKKSMVFYVGKAPTGRKTKWKLNEYRA 96 445566799********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.294 | 1 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-24 | 13 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-10 | 24 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
DFSCGVVCLV AAELSGEMCR EDKEQCFFFA PMQERQARGG RPSRSTAVGY WKATGSPCQV 60 YSSENKVIGM KKSMVFYVGK APTGRKTKWK LNEYRAIEII SPPAPNSSSS SVPMFRLRHE 120 FTLCRVYVVS GSSRAFDRRP LKLVARETIQ DGDGGGRSSG ESASPSGSVV ENNVGISHFM 180 KTISMEKEEP IWDWEQLNWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-20 | 23 | 134 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-20 | 23 | 134 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-20 | 23 | 134 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-20 | 23 | 134 | 70 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-20 | 23 | 134 | 73 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-20 | 23 | 134 | 70 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-20 | 23 | 134 | 70 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034224.1 | 1e-99 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-58 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AAM4 | 1e-119 | A0A059AAM4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034224.1 | 4e-99 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 8e-59 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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