PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS623098.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 202aa MW: 22440.4 Da PI: 10.0635 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 53.5 | 4.8e-17 | 42 | 130 | 1 | 91 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+a+s+ d++ a+ lL+++++ +sp+g+ qR+a+yf+ AL+arla+ + ++a+ s ++++++++l+a++l + ++P+ EcS623098.10 42 LRSLLILCARALST-DFKTARGLLKQIRQDSSPSGNGSQRVAHYFADALEARLAG-NAGRSQAFYYSVIQKRSVADKLKAYQLQYSACPMA 130 6899*******998.9**************************************9.77777888888888889****************86 PP | |||||||
2 | GRAS | 25.8 | 1.3e-08 | 160 | 201 | 154 | 195 |
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 +e++++tg+rLak++e+++++fef+++++ ++e++++ +L+ EcS623098.10 160 PTEKIKQTGHRLAKYCERFNITFEFQAVASASWECIKVADLK 201 6899***********************9999*******9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.359 | 16 | 202 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-14 | 42 | 130 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-6 | 160 | 201 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
KNGGLLSLEC KSEKLSEIKD PQDPNGTGDH SNKKGNDSTL DLRSLLILCA RALSTDFKTA 60 RGLLKQIRQD SSPSGNGSQR VAHYFADALE ARLAGNAGRS QAFYYSVIQK RSVADKLKAY 120 QLQYSACPMA NPYPRAFKEN WRGSKAANHR NRTSTTGFCP TEKIKQTGHR LAKYCERFNI 180 TFEFQAVASA SWECIKVADL KI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043520.1 | 2e-95 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724289.1 | 2e-95 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724290.1 | 2e-95 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724291.1 | 2e-95 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 4e-35 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A059D471 | 2e-95 | A0A059D471_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059D4N0 | 3e-94 | A0A059D4N0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043520.1 | 7e-95 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 2e-37 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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