PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS596925.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 234aa MW: 25697 Da PI: 7.339 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.4 | 3.8e-23 | 187 | 234 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+vsg+e+rfCqqCsr EcS596925.10 187 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVSGIERRFCQQCSR 234 6**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-23 | 181 | 234 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.179 | 185 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-22 | 186 | 234 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-17 | 188 | 234 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSAISLMEWN AKPPLQWEWE NLMMFGSKAT ETSKPLRATD WGIEAEELID PGSLFLYENG 60 GGSSSCTSID PGYTSVSKSS KSASVNSSST DELKISKFSV EAHEGFSLQS SKKELAVNDF 120 TGMSPALEPS VCSGEPLLSL KLGKRIYFEN TIDKDHVKTQ DLPSVMKSPD TPAKRNKSSC 180 QGTSAPRCQV EGCNLDLSSA KDYHRKHRVC ESHSKCPKVI VSGIERRFCQ QCSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-16 | 184 | 234 | 2 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044819.1 | 1e-170 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_010044820.1 | 1e-170 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_018724685.1 | 1e-170 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
TrEMBL | A0A059D8Q5 | 1e-169 | A0A059D8Q5_EUCGR; Uncharacterized protein | ||||
TrEMBL | L7Z7M6 | 1e-169 | L7Z7M6_EUCCD; SPL2-like protein | ||||
STRING | XP_010044819.1 | 1e-169 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-49 | squamosa promoter binding protein-like 2 |