PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS596752.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 50aa MW: 5627.67 Da PI: 10.3793 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.6 | 4.3e-19 | 13 | 50 | 1 | 38 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG 38 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa+vhk+FG EcS596752.10 13 PCAACKLLRRRCARDCVFAPYFPADQPQKFAIVHKVFG 50 7************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.521 | 12 | 50 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-17 | 13 | 50 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 50 aa Download sequence Send to blast |
MKESGRKQGT LSPCAACKLL RRRCARDCVF APYFPADQPQ KFAIVHKVFG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-15 | 9 | 50 | 7 | 48 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-15 | 9 | 50 | 7 | 48 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064042.1 | 5e-31 | PREDICTED: LOB domain-containing protein 4 isoform X1 | ||||
Swissprot | Q9SHE9 | 2e-25 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A059C0A2 | 1e-29 | A0A059C0A2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064042.1 | 2e-30 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-14 | LOB domain-containing protein 4 |