PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS589730.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 144aa    MW: 16221.1 Da    PI: 7.5006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS589730.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.93e-1454104155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ +Aa+a+++a+ k +g
  EcS589730.10  54 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 104
                   89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-2554114No hitNo description
PfamPF008471.2E-954104IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1854114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-1755112IPR001471AP2/ERF domain
SMARTSM003807.0E-3155118IPR001471AP2/ERF domain
PROSITE profilePS5103215.48855112IPR001471AP2/ERF domain
PRINTSPR003678.6E-75667IPR001471AP2/ERF domain
PRINTSPR003678.6E-794114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
AYDRAAIKFR GVDADINFRI EDYQEDMKQM SNLTKEEFVH VLRRQSTGFP RGSSKYRGVT  60
LHKCGRWEAR MGQFLGKKYV YLGLFDTEID AARAYDKAAI KCNGKDAVTN FDPSIYEDEL  120
NPSGNAADHN LDLSLGSSAS KPNN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (Probable) (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457, PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Induced by SH5 in spikelets abscission zones (AZ). Triggered by cold stress (PubMed:24923192). {ECO:0000269|PubMed:24923192, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028218.13e-93PREDICTED: floral homeotic protein APETALA 2 isoform X1
RefseqXP_010028219.13e-93PREDICTED: floral homeotic protein APETALA 2 isoform X2
SwissprotA0A0N7KJT89e-81APL25_ORYSJ; APETALA2-like protein 5
SwissprotB8AVJ91e-80APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A059ALT06e-92A0A059ALT0_EUCGR; Uncharacterized protein
TrEMBLA0A059AM669e-93A0A059AM66_EUCGR; Uncharacterized protein
TrEMBLA0A059AMM86e-92A0A059AMM8_EUCGR; Uncharacterized protein
STRINGXP_010028218.11e-92(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-83AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]
  2. Yoon J, et al.
    The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
    Plant J., 2014. 79(5): p. 717-28
    [PMID:24923192]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]