PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS588749.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28991.6 Da PI: 5.8644 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.4 | 3.2e-56 | 76 | 179 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvd EcS588749.10 76 QLQNFWTNQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 172 89******9999************************************************************************************* PP NF-YC 95 ivprdel 101 ivpr++l EcS588749.10 173 IVPREDL 179 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.37E-34 | 62 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDQQGNGQTP AIGVSSSAQM SYGLSPYQPN QMAGGAPPGS AGQMQPPQPA SSAQLAQHQL 60 AYQHIHQQQQ QQLQQQLQNF WTNQYQEIEQ TTDFKNHSLP LARIKKIMKA DEDVRMISAE 120 APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREDLR 180 DEVLASMPRA GGLPVGPPAE GVPYYYVPSQ HGPQMGVPPG VIASRPVTDQ SMYSQQPHPY 240 MAPPMWPQQQ PQQQQPPADS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-63 | 84 | 176 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010024394.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_010024395.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_018716798.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_018716799.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 4e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2I4GSK3 | 1e-127 | A0A2I4GSK3_JUGRE; nuclear transcription factor Y subunit C-9-like | ||||
STRING | XP_010024394.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 6e-80 | nuclear factor Y, subunit C9 |