PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS582569.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 192aa MW: 21234.7 Da PI: 7.2926

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS582569.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.4	4.6e-22	12	88	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++w+fF++ ++++a+g r++r++++gyWkat + v+s+++e++g+kk++vf+ g+ p+g+kt+W ++eyr+ EcS582569.10 12 RDDGEQWFFFAPLQEREARGGRPSRSMATGYWKATASAGYVYSSDNEVIGVKKSMVFHVGKPPTGRKTQWKLNEYRA 88 456789*********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.302	1	120	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-24	9	119	IPR003441	NAC domain
Pfam	PF02365	5.1E-10	16	87	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MRITKLAGEL CRDDGEQWFF FAPLQEREAR GGRPSRSMAT GYWKATASAG YVYSSDNEVI 60 GVKKSMVFHV GKPPTGRKTQ WKLNEYRAVE LSPTIPNSTS NNVSIPKLRR EFTLCRVYVV 120 SGSSRAFDRR PPEVVARETT IQGGNGAASN EGGGCEDAPS SGVVVANAGC SHPWETASLE 180 EPIWDWEQLD WF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-18	16	125	71	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-18	16	125	71	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-18	16	125	71	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-18	16	125	71	170	NO APICAL MERISTEM PROTEIN
4dul_A	7e-18	16	125	71	170	NAC domain-containing protein 19
4dul_B	7e-18	16	125	71	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034213.1	1e-133	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-60	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AAU5	1e-132	A0A059AAU5_EUCGR; Uncharacterized protein
STRING	XP_010034213.1	1e-133	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-62	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]