PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS579793.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 178aa    MW: 19986.6 Da    PI: 9.4336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS579793.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-124587754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    Er+RR+++ ++++ Lr ++P+ +      K++Ka+i + A++YI++L
  EcS579793.10 45 VSERNRRKKLTERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 87
                  57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7963887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-124192No hitNo description
SuperFamilySSF474591.3E-1641102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1644102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-144493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-104587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
LYLPRSSHQK SLENYGSWVD EQISGYYDSS SPDGAASTAA SKNIVSERNR RKKLTERLFA  60
LRAVVPNISK MDKASIIKDA IDYIQELHDQ ERRIQAEILE LESGKLKKGP GGYDFDQDLP  120
AYLRSKKKRT DAFYDSGGSR ISPIEVLEVI SPLSLSLSLS LPLKKKKNRD LDVVVQAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1443103969Transcription factor MYC2
5gnj_B9e-1443103969Transcription factor MYC2
5gnj_E9e-1443103969Transcription factor MYC2
5gnj_F9e-1443103969Transcription factor MYC2
5gnj_G9e-1443103969Transcription factor MYC2
5gnj_I9e-1443103969Transcription factor MYC2
5gnj_M9e-1443103969Transcription factor MYC2
5gnj_N9e-1443103969Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048564.11e-94PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV94e-42BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A059CRK73e-93A0A059CRK7_EUCGR; Uncharacterized protein
STRINGXP_010048564.15e-94(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-46bHLH family protein