PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS577108.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23420.6 Da PI: 10.3165 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.5 | 3.8e-21 | 26 | 107 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +fF++ +k+yatg+rk+r ++ +W++tgk+++vl+ ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l EcS577108.10 26 DGQIRHFFHRPAKAYATGTRKRRRvhksadERETRWHKTGKTRSVLA-GRVVKGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 107 34455******************635555444889************.999***********65579**************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.523 | 1 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-22 | 24 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-8 | 31 | 107 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MTLNFHALKI SFECLFYVHH AGVSKDGQIR HFFHRPAKAY ATGTRKRRRV HKSADERETR 60 WHKTGKTRSV LAGRVVKGFK KILVLYNNYG RQRKPEKTNW VMHQYHLGKS EEERDGELVV 120 SKVFHQTQPR RPSSTNLREP KDTMPKSDQR LNENDHVLRS SIEVIGYNSN SPCDVSYDQL 180 FIPNFAVHGE AAFLDPLLEY S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 44 | 48 | RKRRR |
2 | 45 | 49 | KRRRV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052264.1 | 1e-128 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 2e-56 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059CCV5 | 1e-105 | A0A059CCV5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052264.1 | 1e-127 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 7e-59 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|