PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS575671.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 237aa    MW: 27305.5 Da    PI: 5.5785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS575671.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+  +   G ++W+t+++  g+ R++k+c++rw +yl
     EcS575671.10 14 RGPWTIEEDHKLISFIMNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.26.7e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++
     EcS575671.10  67 RGGFTEPEEDQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.551961IPR017930Myb domain
SuperFamilySSF466893.74E-2911108IPR009057Homeodomain-like
SMARTSM007175.6E-81363IPR001005SANT/Myb domain
PfamPF002498.1E-131461IPR001005SANT/Myb domain
CDDcd001674.72E-61661No hitNo description
PROSITE profilePS5129425.37262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2665117IPR009057Homeodomain-like
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567110IPR001005SANT/Myb domain
CDDcd001672.43E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLISFIM NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDVKRGGF TEPEEDQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHQPIQ EDENNAQEMV NETDVDPNSI TEGSSHSDDK PTVLEADQDK VEAFSMEDEI  180
GLMAFEETAN LLENFEWLCG SFNEDQERSR RNQQEMNTHV SQSSSSSVED SHLLQQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-29121162105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029050.11e-155PREDICTED: myb-related protein 315
SwissprotQ9C7U74e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A059AR571e-154A0A059AR57_EUCGR; Uncharacterized protein
STRINGXP_010029050.11e-155(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-84myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]