PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS571845.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 285aa MW: 31658.5 Da PI: 7.9586

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS571845.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46.8	5.6e-15	1	25	28	52
RWP-RK 28 clTvLKriCRqyGIkRWPhRkiksl 52 c+T+LKriCRq+GI+RWP+Rkik++ EcS571845.10 1 CPTTLKRICRQHGIARWPSRKIKKV 25 9**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	3.0E-12	1	25	IPR003035	RWP-RK domain
PROSITE profile	PS51519	12.241	1	45	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.69E-27	183	270	No hit	No description
PROSITE profile	PS51745	26.775	183	266	IPR000270	PB1 domain
SMART	SM00666	4.1E-30	183	266	IPR000270	PB1 domain
Pfam	PF00564	1.7E-21	184	265	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.3E-25	184	265	No hit	No description
CDD	cd06407	8.59E-48	184	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
CPTTLKRICR QHGIARWPSR KIKKVNHSLK KLQHVIDSVQ GAKGTIKLGS FYESFPELST 60 EISGEGPSSS KQSDPPKKTD HQPDINIDNS AATISKSPSA SCSQCSTSTT SGSNEANVHS 120 TTILASSGRN DQIIEDPFKL LKRARSHAEL HEPQILARSH SHMSFDQHPL PNIQGHHLQD 180 GLIFRVKATF GEEKIRLVLQ PTWGFADLRQ EIAKRFSIDD VGGIDLKYLD DDGEWVLLTC 240 DADLEECMDV YRTSQGHTIR MSVHPASHPH RNSLGSSGHT DKRFL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066333.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010066334.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018715170.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018715171.1	0.0	PREDICTED: protein NLP2
Refseq	XP_018715172.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	4e-76	NLP2_ARATH; Protein NLP2
TrEMBL	A0A059BDT6	0.0	A0A059BDT6_EUCGR; Uncharacterized protein
STRING	XP_010066333.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	2e-76	Nin-like family protein