PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS570676.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28717.9 Da PI: 6.9636 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 140 | 192 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr ++ +g+++AeIrdp++n ++r +lg+f t+ eAa a+++a+ +++g+ EcS570676.10 140 SRYRGVRKRP-WGKYAAEIRDPKKN--SARRWLGTFETPREAALAYDQAAFAMRGA 192 79********.**********9887..5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.95E-30 | 140 | 201 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-22 | 140 | 200 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 140 | 191 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 141 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 141 | 199 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-34 | 141 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-13 | 142 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-13 | 181 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
IPSSFNSRHG IVRTEPYSVP NLVFFSPPFR INMSATSSTI SDTDAALLER IRQHLLNDDD 60 FETLAKTAQN VRFHCPNSSF DTFSSAETTM WFEATDYDDI GIYHEHPKDA VGSKSPSSSN 120 EQPVMDYGDV QANEALSEGS RYRGVRKRPW GKYAAEIRDP KKNSARRWLG TFETPREAAL 180 AYDQAAFAMR GAKARLNFPH LIGCDEVEPV RVTRKQHRST KAESSSLDPK WRKEDLIGLA 240 SDPHELNSFL LSFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-27 | 137 | 206 | 1 | 70 | ATERF1 |
3gcc_A | 9e-27 | 137 | 206 | 1 | 70 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018728767.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A059C5A3 | 9e-97 | A0A059C5A3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058510.1 | 1e-106 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-38 | ethylene-responsive element binding factor 13 |