PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS565187.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 190aa MW: 22328.7 Da PI: 9.534 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 173.9 | 1.2e-53 | 2 | 187 | 187 | 373 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++ +L++++gE+++Vn +++ ++llde+v l+++rd+vL+l+++++P+++v + + + + + F++rf eal +ysalfd+++++l r+++ r EcS565187.10 2 DTIKIGDLKIRNGETIVVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSALFDAFDTNLERDNQMRL 98 788999******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++E+e++gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl+ +k+ ++ l ++++d + v+e+ +++++gWk+r L + S+W EcS565187.10 99 TYEKEFFGREAINVIACEGTERVERPETYKQWQVRNKRAGFKQLPLDPALMKKLRSKLGEFPDD-FVVDEDGHWMLQGWKGRILRASSCW 187 **************************************************************66.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.798 | 1 | 169 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-51 | 2 | 187 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
WDTIKIGDLK IRNGETIVVN TMFRFKNLLD ETVVLNNPRD SVLNLIRKIR PHLFVQAIVN 60 GSFSVPFFVT RFREALFHYS ALFDAFDTNL ERDNQMRLTY EKEFFGREAI NVIACEGTER 120 VERPETYKQW QVRNKRAGFK QLPLDPALMK KLRSKLGEFP DDFVVDEDGH WMLQGWKGRI 180 LRASSCWVPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033115.1 | 1e-129 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 1e-86 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A059AFY6 | 1e-128 | A0A059AFY6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033115.1 | 1e-129 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 6e-89 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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