PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS558863.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 24519.2 Da PI: 10.5365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+ps r r +lg+f ta eAa a+++a+ +++g EcS558863.10 105 CNYRGVRQRT-WGKWVAEIREPS----RgSRLWLGTFPTALEAALAYDKAASAMYG 155 56*****999.**********84....36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-13 | 105 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-29 | 105 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.3E-31 | 106 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-37 | 106 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 106 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 106 | 164 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.3E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MESGASSIDQ ISKSAAEILA KWKQYNDKVN SCIQSSDSPS GSSPKSATPP QPPPPPPPAA 60 AAAAAAAAAA AVVAVPVQVP TRRVHAKGSK KGCMKGKGGP ENLRCNYRGV RQRTWGKWVA 120 EIREPSRGSR LWLGTFPTAL EAALAYDKAA SAMYGSFARL NFPLGLSSKD SSKDSSSSTT 180 IAAREKGLTF LCKLSIFVGF WGVPNLGFVF DFCFVQWVLF CRGFLKIRW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 106 | 168 | 5 | 68 | ATERF1 |
3gcc_A | 3e-20 | 106 | 168 | 5 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460156.1 | 5e-51 | PREDICTED: putative dehydration-responsive element-binding protein 2H | ||||
TrEMBL | A0A067L8G7 | 2e-47 | A0A067L8G7_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A3S8T902 | 4e-49 | A0A3S8T902_FRAAN; Transcription factor ERF28 | ||||
STRING | XP_004293490.1 | 5e-50 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-25 | DRE-binding protein 2A |