PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS556756.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 200aa MW: 22092.7 Da PI: 6.5804 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.4 | 3e-08 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++ e+++fC ++ lC+dC H+ Ht+ EcS556756.10 4 QCDVCDKGEATIFCAADEAALCDDCDRRVHHAnklankHTR 44 7******88*******************9644477777775 PP | |||||||
2 | zf-B_box | 30.2 | 9.2e-10 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++e ++ lfC++++ lC++C + +H++ Ht EcS556756.10 54 ESPLCDICQERRALLFCQEDRAILCRECDVPIHRSneHT 92 6789*****************************888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.537 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.46E-4 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 5.1E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.367 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-8 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.18E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MKIQCDVCDK GEATIFCAAD EAALCDDCDR RVHHANKLAN KHTRYSLLHP PFKESPLCDI 60 CQERRALLFC QEDRAILCRE CDVPIHRSNE HTQKHNRFLL TGVKLSSSSP PNQASSSSSA 120 LSTDMKISRS SAKRQNCPPS SVSTAERSLP LGAYQDENHT SDAGSISTSS ISEYLMETLP 180 GWHVDEFLDP SSTASNGYCK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066200.1 | 1e-147 | PREDICTED: B-box zinc finger protein 20 isoform X1 | ||||
Swissprot | Q0IGM7 | 6e-65 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 1e-64 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A059BDU5 | 1e-145 | A0A059BDU5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066200.1 | 1e-146 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39070.1 | 2e-50 | DBB family protein |