PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS556048.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 10603.4 Da PI: 8.7906 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 45 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G+++W++Iar + gR++k+c++rw + EcS556048.10 45 KGPWSPEEDAILSQLVSKFGPRNWSLIARGIA-GRSGKSCRLRWCNQ 90 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.684 | 40 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-18 | 41 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 44 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 45 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 46 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-14 | 47 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
ANEVDGADGG GEDXRSGDEA EAAAAGGGND GSGSSGGKAG RDRVKGPWSP EEDAILSQLV 60 SKFGPRNWSL IARGIAGRSG KSCRLRWCNQ LDPAVKRKPF TGK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 42 | 101 | 4 | 63 | B-MYB |
1gv2_A | 1e-17 | 44 | 101 | 3 | 60 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-17 | 44 | 101 | 57 | 114 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-17 | 44 | 101 | 57 | 114 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-17 | 44 | 101 | 3 | 60 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 44 | 101 | 3 | 60 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037759.1 | 3e-63 | PREDICTED: myb-related protein A | ||||
Swissprot | O04192 | 6e-27 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | A0A059A764 | 6e-62 | A0A059A764_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037759.1 | 1e-62 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23157 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-30 | myb domain protein 109 |
Publications ? help Back to Top | |||
---|---|---|---|
|