PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS554508.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 122aa MW: 14265.3 Da PI: 6.2615 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 108.1 | 1.2e-33 | 1 | 119 | 256 | 374 |
GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 rf eal ++sa+fd lea++pr++ er +E+e+lg++++nv+aceg++r+er et+++ + r +aGF+++pl++++++ ak l+ ++ + +++e EcS554508.10 1 RFREALFHFSAVFDILEATVPRDDPERLLLEQEILGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDVVSLAKDKLKSCYHKDFEIE 97 8*****************************************************************************************889**** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e+ ++l++gWk+r ++++S Wr EcS554508.10 98 EDGQWLLQGWKGRIIYALSTWR 119 *********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.011 | 1 | 99 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-31 | 1 | 119 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
RFREALFHFS AVFDILEATV PRDDPERLLL EQEILGKQAM NVIACEGSDR IERPETYKSS 60 HVRNLRAGFR QLPLDKDVVS LAKDKLKSCY HKDFEIEEDG QWLLQGWKGR IIYALSTWRP 120 DC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032388.1 | 9e-82 | PREDICTED: scarecrow-like protein 9 isoform X1 | ||||
Refseq | XP_018720025.1 | 6e-82 | PREDICTED: scarecrow-like protein 9 isoform X2 | ||||
Swissprot | O80933 | 1e-47 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059ACH2 | 2e-80 | A0A059ACH2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032388.1 | 4e-81 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 6e-50 | GRAS family protein |