PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS553303.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 155aa MW: 17265.6 Da PI: 7.5313 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.8 | 2.1e-09 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Ck+ ++Ck++H++ EcS553303.20 42 PGQPDCSYFLKTGDCKFKSNCKYHHPK 68 5789*********************96 PP | |||||||
2 | zf-CCCH | 35.5 | 1.7e-11 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G+ CkF H++ EcS553303.20 90 QNVCLYYSRYGICKFGPACKFDHPE 114 568********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.568 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-7 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-4 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 84 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.474 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-5 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
FPVNPPGPVV RPPSAYIMKH PVTDIHIYPH HQMVIDEFPE RPGQPDCSYF LKTGDCKFKS 60 NCKYHHPKDR ISKSPPVVLS DKGLPLRPDQ NVCLYYSRYG ICKFGPACKF DHPEHLTSST 120 ISELDQPSSI GDSATSDGPL MNGTRNSSEA IQQSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026830.1 | 1e-107 | PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 | ||||
Swissprot | Q9STM4 | 5e-46 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A059CYA5 | 1e-106 | A0A059CYA5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026830.1 | 1e-106 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15633 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 9e-48 | C3H family protein |
Publications ? help Back to Top | |||
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