PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS551004.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YA

Protein Properties

Length: 210aa MW: 23559.6 Da PI: 10.8682

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS551004.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.4	8.5e-32	45	101	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e +kl +++rkpylheSRh hA+rR+Rg+gGrF EcS551004.10 45 EEPVYVNAKQYNGILRRRQSRAKAELARKL-IRERKPYLHESRHLHAMRRARGCGGRF 101 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.9E-36	43	104	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.009	44	104	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-27	46	101	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	47	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	49	69	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.3E-23	78	101	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
ACGSYEYSEQ YHDGVKPAYG PQISAHSQYL RYNSLRLGLP LRVAEEPVYV NAKQYNGILR 60 RRQSRAKAEL ARKLIRERKP YLHESRHLHA MRRARGCGGR FLNTKKQDNA ATDPTPEGSI 120 SSDSRSTGSA RESYLSSSKL ATSALSLNED PSTSLISKQN PGSWQIHCPI PWGGGGLVQR 180 NWNNRKAHKA HRRLSAAPTR TILLRCPIRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	45	114	2	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057360.1	1e-107	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	4e-34	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A059DIJ0	1e-106	A0A059DIJ0_EUCGR; Uncharacterized protein
STRING	XP_010057360.1	1e-107	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15602	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-35	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]