PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS550962.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 18408.3 Da PI: 10.3067 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 49 | 159 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 f+k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +s++yvl++GW keFvk gL +gD v ++ EcS550962.10 49 FKKRLTQSDLGHLSRLLIRRDFLKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSRSYVLKGGWmKEFVKRRGLAAGDEVGIYW 145 899**************************98888777545558889999997766778888888*************668***************97 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 d s+f +++v+rk EcS550962.10 146 DAIaSKF--HFSVLRK 159 7655666..8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-16 | 47 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.1E-5 | 49 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-9 | 49 | 158 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.44E-17 | 49 | 158 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-17 | 49 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MASLTNAESL IAEKKAKCKR TQKGKKEASG CGAEEVSTEL TLLFDPYKFK KRLTQSDLGH 60 LSRLLIRRDF LKSHFLRWMN EETVRQVESG KGADVIVRDM DTCSEHRLVF VFWASSRSYV 120 LKGGWMKEFV KRRGLAAGDE VGIYWDAIAS KFHFSVLRKA N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018728844.1 | 1e-110 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | A0A059C5T8 | 1e-109 | A0A059C5T8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058723.1 | 1e-104 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 2e-30 | B3 family protein |