PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS547846.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 216aa MW: 24061.7 Da PI: 8.4572 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.8 | 7.7e-13 | 35 | 57 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++ +tGtCk+G++CkF+H+ EcS547846.10 35 EDCSYYIKTGTCKFGSNCKFNHP 57 89********************9 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 81 | 105 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ G Ck+G C+F+H++ EcS547846.10 81 QTECKYYLNKGGCKFGKACRFNHSR 105 568********************95 PP | |||||||
3 | zf-CCCH | 35.6 | 1.5e-11 | 126 | 151 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Cky ++C+++H++ EcS547846.10 126 GEKECPFYMRTGSCKYAANCRYNHPE 151 7899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.746 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-7 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 35 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 37 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-6 | 81 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 84 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 124 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-6 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 126 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
SDGGEKGEDG DSESDDEKRE ERRKFNKYPV RPEAEDCSYY IKTGTCKFGS NCKFNHPVRR 60 KNQVAKDKMK EKEEPKERVG QTECKYYLNK GGCKFGKACR FNHSRPKTFV PPYQGLNFLG 120 LPIRPGEKEC PFYMRTGSCK YAANCRYNHP EPSAGGGDPP SEYGNGGSAS LQSASQFPVA 180 SWSSPGTLND AAPFVPVMYS PTHAVSSHNA EWNGYQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026830.1 | 1e-144 | PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 | ||||
Refseq | XP_010026837.1 | 1e-144 | PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 5e-75 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A059CZ27 | 1e-155 | A0A059CZ27_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026830.1 | 1e-143 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 9e-71 | C3H family protein |
Publications ? help Back to Top | |||
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